Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CRC rs2252526 chr12:52381230 G/T 1.93E-5 360 22.62 24.33 16.42 KM Plot
CRC rs2290596 chr5:54649880 G/T 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs2290597 chr5:54650121 G/C 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs2305679 chr5:54654202 C/G 6.03E-5 373 22.32 23.43 9.67 KM Plot
CRC rs230737 chr5:54727661 C/T 3.07E-5 374 14.05 22.67 22.33 KM Plot
CRC rs2316399 chr7:57724594 C/T 1.37E-6 371 11.92 20.58 23.37 KM Plot
CRC rs2316403 chr7:57718835 T/G 1.9E-5 369 12.6 20.38 23.37 KM Plot
CRC rs2354433 chr1:146680262 A/G 1.1E-5 373 11.13 26.12 21.9 KM Plot
CRC rs2382590 chr7:62086399 C/T 7.31E-6 368 24.33 19.8 14.37 KM Plot
CRC rs2382591 chr7:62076963 G/T 6.59E-7 369 24.2 20.23 11.27 KM Plot
CRC rs2382594 chr7:62047372 C/T 6.38E-6 362 23.1 20.27 14.37 KM Plot
CRC rs2382598 chr7:62023432 T/G 7.73E-7 367 23.37 20.23 11.27 KM Plot
CRC rs2414925 chr15:67129986 A/G 5.82E-8 374 23.88 18.53 18.53 KM Plot
CRC rs2646311 chr12:59964877 G/A 1.09E-5 373 24.77 18.53 10.4 KM Plot
CRC rs2671854 chr12:59965817 A/T 1.09E-5 373 24.77 18.53 10.4 KM Plot